Publications 

Special Issue of the Journal of Experimental Botany on Organellar Signalling

A current overview on the ongoing research and general background of topics to be addressed in CALIPSO can be found in a special issue of the Journal of Experimental Botany that was organized by the members of the ITN CALIPSO. 

https://academic.oup.com/jxb/issue/67/13

The full text versions of the articles published will be freely available.

List of publications from the CALIPSO-project

• Rocha AG, Mehlmer N, Stael S, Mair A, Parvin N, Chigri F, Teige M, Vothknecht UC (2014) Phosphorylation of Arabidopsis transketolase at Ser428 provides a potential paradigm for the metabolic control of chloroplast carbon metabolism. Biochem. J. 458 (2): 313-323. doi: 10.1042/BJ20130631

• Bayer RG, Köstler T, Jain A, Stael S, Ebersberger I*, Teige M* (2014) Higher plant proteins of cyanobacterial origin – are they or are they not preferentially targeted to chloroplasts? Mol. Plant. 7(12):1797-800. doi:10.1093/mp/ssu095.
  
  
• Tomanov K, Zeschmann A, Hermkes R, Eifler K, Ziba I, Grieco M, Novatchkova M, Hofmann K, Hesse H, Bachmair A. (2014) Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism. Plant Cell 26(11):4547-60. doi:10.1105/tpc.114.131300.
  
  
• Jajoo A, Mekala NR, Tomar RS, Grieco M, Tikkanen M, Aro EM. (2014) Inhibitory effects of polycyclic aromatic hydrocarbons (PAHs) on photosynthetic performance are not related to their aromaticity. J Photochem. Photobiology B. 137:151-5. doi:10.1016/j.jphotobiol.2014.03.011.
  
  
• Jajoo A, Mekala NR, Tongra T, Tiwari A, Grieco M, Tikkanen M, Aro EM. (2014) Low pH-induced regulation of excitation energy between the two photosystems. FEBS Lett. 588(6):970-4. doi:10.1016/j.febslet.2014.01.056.
  

• Bayer RG, Stael S, Teige M (2015) Chloroplast isolation and affinity chromatography for enrichment of low-abundant proteins in complex proteomes. Methods Mol. Biol. 1295: 211-223. doi: 10.1007/978-1-4939-2550-6_16

• Grieco M, Suorsa M, Jajoo A, Tikkanen M, Aro EM. (2015) Light-harvesting II antenna trimers connect energetically the entire photosynthetic machinery - including both photosystems II and I. Biochim Biophys Acta 1847(6-7):607-619. doi:10.1016/j.bbabio.2015.03.004.
  
  
• Suorsa M, Rantala M, Mamedov F, Lespinasse M, Trotta A, Grieco M, Vuorio E, Tikkanen M, Järvi S and Aro EM. (2015) Light acclimation involves dynamic re-organisation of the pigment-protein megacomplexes in non-appressed thylakoid domains. The Plant Journal 84(2):360-373. doi: 10.1111/tpj.13004.
  
  
• Kmiecik P, Leonardelli M, Teige M (2016) Novel connections in plant organellar signalling link different stress responses and signalling pathways. Jourmnal of Exp. Botany 67(13): 3793-807. doi:10.1093/jxb/erw136.
  
  
• Grieco M, Jain A, Ebersberger I, Teige I. (2016) An evolutionary view on thylakoid protein phosphorylation uncovers novel phosphorylation hotspots with potential functional implications. Journal of Experimental Botany 67(13):3883-96. doi: 10.1093/jxb/erw164.
  
  
• Tiwari A, Mamedov F, Grieco M, Suorsa M, Jajoo A, Styring S, Tikkanen M, Aro EM. (2016) Photodamage of iron-sulphur clusters in photosystem I induces non-photochemical energy dissipation. Nat Plants. 2:16035. doi: 10.1038/nplants.2016.35.
  
  
• Tikkanen M, Rantala S, Grieco M, Aro EM. (2017) Comparative analysis of mutant plants impaired in the main regulatory mechanisms of photosynthetic light reactions - From biophysical measurements to molecular mechanisms. Plant Physiol. Biochem. 112:290-301. doi: 10.1016/j.plaphy.2017.01.014.
  
  
• Roustan V., Jain A., Teige M, Ebersberger I*, Weckwerth W* (2016) An evolutionary perspective of AMPK-TOR signaling in the three domains of life J. Exp. Bot. 67(13): 3897-3907 doi:10.1093/jxb/erw211
  
  
• Ghatak A, Chaturvedi P, Nagler M, Roustan V, Lyon D, Bachmann G, Postl W, Schröfl A, Desai N, Varshney RK, Weckwerth W. (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet). J Proteomics 143:122-35. doi: 10.1016/j.jprot.2016.02.032.
  
  
• Furuhashi T, Nakamura T, Fragner L, Roustan V, Schön V, Weckwerth W. (2016) Biodiesel and poly-unsaturated fatty acids production from algae and crop plants - a rapid and comprehensive workflow for lipid analysis. Biotechnol J. 11(10):1262-1267. doi: 10.1002/biot.201400197.
  
  
• Wurzinger B, Mair A, Fischer-Schrader K, Nukarinen E, Roustan V, Weckwerth W, Teige M. (2017) Redox state-dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals. FEBS Lett. 591(21):3625-3636. doi: 10.1002/1873-3468.12852.
  
  
• Walter J, Lynch F, Battchikova N, Aro EM, Gollan PJ. (2016) Calcium impacts carbon and nitrogen balance in the filamentous cyanobacterium Anabaena sp. PCC 7120. J. Exp. Bot. 67(13): 3997-4008. doi:10.1093/jxb/erw112.
  
  
• Łabuz J, Samardakiewicz S, Hermanowicz P, Wyroba E, Pilarska M, Gabryś H 2016. Blue light-dependent changes in loosely bound calcium in Arabidopsis mesophyll cells: an X-ray microanalysis study. J. Exp. Botany 67(13), doi:10.1093/jxb/erw089
  
  
• Sztatelman O, Łabuz J, Hermanowicz P, Banaś AK, Bażant A, Zgłobicki P, Aggarwal Ch, Nadzieja M, Krzeszowiec W, Strzałka W, Gabryś H 2016. Fine tuning chloroplast movements through physical interactions between phototropins. J. Exp. Botany 76(13), doi: 10.1093/jxb/erw265
  
  
• Eckstein A, Krzeszowiec W, Banaś AK, Janowiak F, Gabryś H. (2016) Abscisic acid and blue light signaling pathways in chloroplast movements in Arabidopsis mesophyll. Acta Biochim Pol. 63(3):449-58. doi: 10.18388/abp.2016_1382.
  
  
• Taddei L, Stella GR, Rogato A, Bailleul B, Fortunato AE, Annunziata R, Sanges R, Thaler M, Lepetit B, Lavaud J, Jaubert M, Finazzi G, Bouly JP, Falciatore A. (2016) Multisignal control of expression of the LHCX protein family in the marine diatom Phaeodactylum tricornutum. J. Exp. Botany 67(13):3939-51. doi: 10.1093/jxb/erw198.
  
  
• Fortunato AE, Jaubert M, Enomoto G, Bouly JP, Raniello R, Thaler M, Malviya S, Bernardes JS, Rappaport F, Gentili B, Huysman MJ, Carbone A, Bowler C, d'Alcalà MR, Ikeuchi M, Falciatore A. (2016) Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean. The Plant Cell 28(3):616-28. doi: 10.1105/ tpc.15.00928.
  
  
• Fortunato AE, Annunziata R, Jaubert M, Bouly JP, Falciatore A. Dealing with light: the widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms. J Plant Physiol. 2015. 172:42-54. doi: 10.1016/j.jplph.2014.06.011.
  
  
• Bowler C, Falciatore A. The molecular life of diatoms. Mar Genomics. 2014, 16:1-3. doi: 10.1016/j.margen.2014.07.002.
  
  
• Lepetit B, Gélin G, Lepetit M, Sturm S, Vugrinec S, Rogato A, Kroth PG, Falciatore A, Lavaud J. (2017) The diatom Phaeodactylum tricornutum adjusts nonphotochemical fluorescence quenching capacity in response to dynamic light via fine-tuned Lhcx and xanthophyll cycle pigment synthesis. New Phytol. 214(1):205-218. doi: 10.1111/nph.14337.
  
  
• Jaubert M, Bouly JP, Ribera d'Alcalà M, Falciatore A. (2017) Light sensing and responses in marine microalgae. Curr Opin Plant Biol.37:70-77. doi:10.1016/j.pbi.2017.03.005.
  
  
• Ruge H, Flosdorff S, Ebersberger I, Chigri F, Vothknecht UC (2016) The calmodulin-like proteins AtCML4 and AtCML5 are single-pass membrane proteins targeted to the endomembrane system by an N-terminal signal anchor sequence. J Exp Bot.67(13):3985-96. doi: 10.1093/jxb/erw101.
  
  
• Lenzoni G, Liu JL, Knight MR. (2017) Predicting plant immunity gene expression by identifying the decoding mechanism of calcium signatures. New Phytologist (in press).
  
  
• Villanova V, Fortunato AE, Singh D, Bo DD, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier A, Poolman M, Curien G, Petroutsos D, Finazzi G. (2017)  Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum. Philos Trans R Soc Lond B Biol Sci. Sep 5: 372 doi: 10.1098/rstb.2016.0404.